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1

Confidence scores for prediction models

Thomas A. Gerds, Mark A. van de Wiel

Journal:

Biometrical Journal

Year:

2011

Language:

english

File:

PDF, 342 KB

english, 2011

2

Comparison of five in vitro digestion models to in vivo experimental results: Lead bioaccessibility in the human gastrointestinal tract

Van de Wiele, Tom R., Oomen, Agnes G., Wragg, Joanna, Cave, Mark, Minekus, Mans, Hack, Alfons, Cornelis, Christa, Rompelberg, Cathy J.M., De Zwart, Loeckie L., Klinck, Ben, Van Wijnen, Joop, Verstraet

Journal:

Journal of Environmental Science and Health Part A

Year:

2007

Language:

english

File:

PDF, 892 KB

english, 2007

3

The separation of Guatemalan craniopagus twins

John Frazee, Itzhak Fried, Henry Kawamoto, Jorge Lazareff, Jaime Nieto, Swati Patel, Mark Urata, Barbara van de Wiele

Journal:

Child's Nervous System

Year:

2004

Language:

english

File:

PDF, 301 KB

english, 2004

4

Modelling the response of river systems to environmental change: Progress, problems and prospects for palaeo-environmental reconstructions

Marco J. Van De Wiel, Tom J. Coulthard, Mark G. Macklin, John Lewin

Journal:

Earth-Science Reviews

Year:

2011

Language:

english

File:

PDF, 2.44 MB

english, 2011

5

Intensity-based analysis of dual-color gene expression data as an alternative to ratio-based analysis to enhance reproducibility

Koen Bossers, Bauke Ylstra, Ruud H Brakenhoff, Serge J Smeets, Joost Verhaagen, Mark A van de Wiel

Journal:

Year:

2010

Language:

english

File:

PDF, 986 KB

english, 2010

6

General power and sample size calculations for high-dimensional genomic data

van Iterson, Maarten, van de Wiel, Mark A., Boer, Judith M., de Menezes, Renée X.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2013

Language:

english

File:

PDF, 1.81 MB

english, 2013

7

The null distribution of Kendall's rank correlation statistic in the presence of ties

Wiel, Mark A. Van De

Journal:

Journal of Nonparametric Statistics

Year:

2005

Language:

english

File:

PDF, 100 KB

english, 2005

8

Support Vector Machine Approach to Separate Control and Breast Cancer Serum Samples

Pham, Thang V, van de Wiel, Mark A, Jimenez, Connie R

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 408 KB

english, 2008

9

An empirical Bayes approach to network recovery using external knowledge

Kpogbezan, Gino B., van der Vaart, Aad W., van Wieringen, Wessel N., Leday, Gwenaël G. R., van de Wiel, Mark A.

Journal:

Biometrical Journal

Year:

2017

Language:

english

File:

PDF, 838 KB

english, 2017

10

Methods for significance testing of categorical covariates in logistic regression models after multiple imputation: power and applicability analysis

Eekhout, Iris, van de Wiel, Mark A., Heymans, Martijn W.

Journal:

BMC Medical Research Methodology

Year:

2017

Language:

english

File:

PDF, 983 KB

english, 2017

11

Learning from a lot: Empirical Bayes for high-dimensional model-based prediction

van de Wiel, Mark A., Te Beest, Dennis E., Münch, Magnus M.

Journal:

Scandinavian Journal of Statistics

Year:

2018

Language:

english

File:

PDF, 740 KB

english, 2018

12

Estimation of variance components, heritability and the ridge penalty in high-dimensional generalized linear models

Veerman, Jurre R., Leday, Gwenaël G. R., van de Wiel, Mark A.

Journal:

Communications in Statistics - Simulation and Computation

Year:

2019

Language:

english

File:

PDF, 4.05 MB

english, 2019

13

Updating of the Gaussian graphical model through targeted penalized estimation

van Wieringen, Wessel N., Stam, Koen A., Peeters, Carel F.W., van de Wiel, Mark A.

Journal:

Journal of Multivariate Analysis

Year:

2020

File:

PDF, 485 KB

2020

14

Identification of genes putatively involved in the pathogenesis of diffuse large B-cell lymphomas by integrative genomics

Joost J. Oudejans, Wessel N. van Wieringen, Serge J. Smeets, Marianne Tijssen, Sjoerd J. Vosse, Chris J. L. M. Meijer, Gerrit A. Meijer, Mark A. van de Wiel, Bauke Ylstra

Journal:

Genes, Chromosomes and Cancer

Year:

2009

Language:

english

File:

PDF, 235 KB

english, 2009

15

Copy number gain at 8q12.1-q22.1 is associated with a malignant tumor phenotype in salivary gland myoepitheliomas

Hedy Vékony, Kerstin Röser, Thomas Löning, Bauke Ylstra, Gerrit A. Meijer, Wessel N. van Wieringen, Mark A. van de Wiel, Beatriz Carvalho, Klaas Kok, C. René Leemans, Isaäc van der Waal, Elisabeth Blo

Journal:

Genes, Chromosomes and Cancer

Year:

2009

Language:

english

File:

PDF, 285 KB

english, 2009

16

Gene expression profiling to identify markers associated with deregulated hTERT in HPV-transformed keratinocytes and cervical cancer

Jillian de Wilde, Saskia M. Wilting, Chris J.L.M. Meijer, Mark A. van de Wiel, Bauke Ylstra, Peter J.F. Snijders, Renske D.M. Steenbergen

Journal:

International Journal of Cancer

Year:

2008

Language:

english

File:

PDF, 437 KB

english, 2008

17

High temperature liquid chromatography hyphenated with ESI-MS and ICP-MS detection for the structural characterization and quantification of halogen containing drug metabolites

Jon S.B. de Vlieger, Mark J.N. Giezen, David Falck, Cornelis Tump, Fred van Heuveln, Martin Giera, Jeroen Kool, Henk Lingeman, Jaap Wieling, Maarten Honing, Hubertus Irth, Wilfried M.A. Niessen

Journal:

Analytica Chimica Acta

Year:

2011

Language:

english

File:

PDF, 945 KB

english, 2011

18

Perioperative complications in children undergoing selective posterior rhizotomy: a review of 105 cases

BARBARA VAN DE WIELE, LORETTA STAUDT, EDUARDO RUBINSTIEN, MARK NUWER, WARWICK PEACOCK

Journal:

Pediatric Anesthesia

Year:

1996

Language:

english

File:

PDF, 80 KB

english, 1996

19

Stepwise classification of cancer samples using clinical and molecular data

Askar Obulkasim, Gerrit A Meijer, Mark A van de Wiel

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 624 KB

english, 2011

20

NMD inhibition fails to identify tumour suppressor genes in microsatellite stable gastric cancer cell lines

Tineke E Buffart, Marianne Tijssen, Jamila El-Bchiri, Alex Duval, A van de Mark Wiel, Bauke Ylstra, Gerrit A Meijer, Beatriz Carvalho

Journal:

BMC Medical Genomics

Year:

2009

Language:

english

File:

PDF, 1.21 MB

english, 2009

21

Genomic profiling identifies common HPV-associated chromosomal alterations in squamous cell carcinomas of cervix and head and neck

Saskia M Wilting, Serge J Smeets, Peter JF Snijders, Wessel N van Wieringen, Mark A van de Wiel, Gerrit A Meijer, Bauke Ylstra, C René Leemans, Chris JLM Meijer, Ruud H Brakenhoff, Boudewijn JM Braakh

Journal:

BMC Medical Genomics

Year:

2009

Language:

english

File:

PDF, 2.13 MB

english, 2009

22

BCL2L1 has a functional role in colorectal cancer and its protein expression is associated with chromosome 20q gain

Anke H Sillars-Hardebol, Beatriz Carvalho, Jeroen AM Beliën, Meike de Wit, Pien M Delis-van Diemen, Marianne Tijssen, Mark A van de Wiel, Fredrik Pontén, Remond JA Fijneman, Gerrit A Meijer

Journal:

The Journal of Pathology

Year:

2012

Language:

english

File:

PDF, 392 KB

english, 2012

23

Comments on: Control of the false discovery rate under

José A. Ferreira, Mark A. van de Wiel

Journal:

Year:

2008

Language:

english

File:

PDF, 166 KB

english, 2008

24

Identification of key genes for carcinogenic pathways associated with colorectal adenoma-to-carcinoma progression

Anke H. Sillars-Hardebol, Beatriz Carvalho, Meike de Wit, Cindy Postma, Pien M. Delis-van Diemen, Sandra Mongera, Bauke Ylstra, Mark A. van de Wiel, Gerrit A. Meijer, Remond J. A. Fijneman

Journal:

Year:

2010

Language:

english

File:

PDF, 302 KB

english, 2010

25

Colorectal adenoma to carcinoma progression is accompanied by changes in gene expression associated with ageing, chromosomal instability, and fatty acid metabolism

Beatriz Carvalho, Anke H. Sillars-Hardebol, Cindy Postma, Sandra Mongera, Jochim Terhaar Sive Droste, Askar Obulkasim, Mark van de Wiel, Wim van Criekinge, Bauke Ylstra, Remond J. A. Fijneman, Gerrit

Journal:

Cellular Oncology

Year:

2012

Language:

english

File:

PDF, 196 KB

english, 2012

26

Proton pump inhibitor-induced acute interstitial nephritis

Linda Härmark, Hans E. Van Der Wiel, Mark C. H. De Groot, A. C. Van Grootheest

Journal:

British Journal of Clinical Pharmacology

Year:

2007

Language:

english

File:

PDF, 92 KB

english, 2007

27

Estimating the False Discovery Rate Using Nonparametric Deconvolution

Mark A. van de Wiel, Kyung In Kim

Journal:

Year:

2007

Language:

english

File:

PDF, 206 KB

english, 2007

28

Nonparametric Testing for DNA Copy Number Induced Differential mRNA Gene Expression

Wessel N. van Wieringen, Mark A. van de Wiel

Journal:

Year:

2009

Language:

english

File:

PDF, 271 KB

english, 2009

29

Chromosomal profiles of high-grade cervical intraepithelial neoplasia relate to duration of preceding high-risk human papillomavirus infection

Mariska Bierkens, Saskia M. Wilting, Wessel N. van Wieringen, Folkert J. van Kemenade, Maaike C.G. Bleeker, Ekaterina S. Jordanova, Marjolein Bekker-Lettink, Mark A. van de Wiel, Bauke Ylstra, Chris J

Journal:

International Journal of Cancer

Year:

2012

Language:

english

File:

PDF, 614 KB

english, 2012

30

Small bowel adenocarcinomas are more similar to colorectal than gastric cancer according to their chromosomal copy number profile

Josien C. Haan, Tineke E. Buffart, Mark A. van de Wiel, Beatriz Carvalho, Cindy Postma, Paul P. Eijk, Nicole C.T. van Grieken, Iris D. Nagtegaal, Chris J.J. Mulder, Karen Maude, Peter Howdle, Phil Qui

Journal:

Cancer Genetics and Cytogenetics

Year:

2010

Language:

english

File:

PDF, 38 KB

english, 2010

31

An inter-laboratory trial of the unified BARGE bioaccessibility method for arsenic, cadmium and lead in soil

Joanna Wragg, Mark Cave, Nick Basta, Esther Brandon, Stan Casteel, Sebastien Denys, Christian Gron, Agnes Oomen, Kenneth Reimer, Karine Tack, Tom Van de Wiele

Journal:

Science of The Total Environment

Year:

2011

Language:

english

File:

PDF, 911 KB

english, 2011

32

CGHpower: exploring sample size calculations for chromosomal copy number experiments

Ilari Scheinin, José A Ferreira, Sakari Knuutila, Gerrit A Meijer, Mark A van de Wiel, Bauke Ylstra

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 541 KB

english, 2010

33

Effects of dependence in high-dimensional multiple testing problems

Kyung In Kim, Mark A van de Wiel

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 371 KB

english, 2008

34

Anti-proliferative action of vitamin D in MCF7 is still active after siRNA-VDR knock-down

José L Costa, Paul P Eijk, Mark A van de Wiel, Derk ten Berge, Fernando Schmitt, Carmen J Narvaez, JoEllen Welsh, Bauke Ylstra

Journal:

Year:

2009

Language:

english

File:

PDF, 754 KB

english, 2009

35

Validation of oligoarrays for quantitative exploration of the transcriptome

Vigdis Nygaard, Fang Liu, Marit Holden, Winston P Kuo, Jeff Trimarchi, Lucila Ohno-Machado, Connie L Cepko, Arnoldo Frigessi, Ingrid K Glad, A Mark van de Wiel, Eivind Hovig, Heidi Lyng

Journal:

Year:

2008

Language:

english

File:

PDF, 810 KB

english, 2008

36

HPV type-related chromosomal profiles in high-grade cervical intraepithelial neoplasia

Mariska Bierkens, Saskia M Wilting, Wessel N van Wieringen, Mark A van de Wiel, Bauke Ylstra, Chris JLM Meijer, Peter JF Snijders, Renske DM Steenbergen

Journal:

Year:

2012

Language:

english

File:

PDF, 631 KB

english, 2012

37

Embedding reach-scale fluvial dynamics within the CAESAR cellular automaton landscape evolution model

Marco J. Van De Wiel, Tom J. Coulthard, Mark G. Macklin, John Lewin

Journal:

Year:

2007

Language:

english

File:

PDF, 1.78 MB

english, 2007

38

A Lego System for Conditional Inference

Hothorn, Torsten, Hornik, Kurt, van de Wiel, Mark A, Zeileis, Achim

Journal:

The American Statistician

Year:

2006

Language:

english

File:

PDF, 236 KB

english, 2006

39

CSE1L,DIDO1andRBM39in colorectal adenoma to carcinoma progression

Anke H. Sillars-Hardebol, Beatriz Carvalho, Jeroen A.M. Beliën, Meike de Wit, Pien M. Delis-van Diemen, Marianne Tijssen, Mark A. van de Wiel, Fredrik Pontén, Gerrit A. Meijer, Remond J. A. Fijneman

Journal:

Cellular Oncology

Year:

2012

Language:

english

File:

PDF, 372 KB

english, 2012

40

Incidence and hemodynamic characteristics of near-fainting in healthy 6- to 16-year old subjects

Catherine C.E. de Jong-de Vos van Steenwijk, Wouter Wieling, Judith M. Johannes, Mark P. Harms, Wietse Kuis, Karel H. Wessling

Journal:

Journal of the American College of Cardiology

Year:

1995

Language:

english

File:

PDF, 687 KB

english, 1995

41

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

Wessel N van Wieringen, Kristian Unger, Gwenaël GR Leday, Oscar Krijgsman, Renée X de Menezes, Bauke Ylstra, Mark A van de Wiel

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 337 KB

english, 2012

42

Quantitative Structural Analysis of Binary Nanocrystal Superlattices by Electron Tomography

Friedrich, Heiner, Gommes, Cedric J., Overgaag, Karin, Meeldijk, Johannes D., Evers, Wiel H., Nijs, Bart de, Boneschanscher, Mark P., de Jongh, Petra E., Verkleij, Arie J., de Jong, Krijn P., van Blaa

Journal:

Year:

2009

Language:

english

File:

PDF, 2.60 MB

english, 2009

43

A Test for Partial Differential Expression

van Wieringen, Wessel N, van de Wiel, Mark A, van der Vaart, Aad W

Journal:

Journal of the American Statistical Association

Year:

2008

Language:

english

File:

PDF, 464 KB

english, 2008

44

Methotrexate Normalizes Up-Regulated Folate Pathway Genes in Rheumatoid Arthritis

Blits, Marjolein, Jansen, Gerrit, Assaraf, Yehuda G., van de Wiel, Mark A., Lems, Willem F., Nurmohamed, Mike T., van Schaardenburg, Dirkjan, Voskuyl, Alexandre E., Wolbink, Gert-Jan, Vosslamber, Sask

Journal:

Arthritis & Rheumatism

Year:

2013

Language:

english

File:

PDF, 1.02 MB

english, 2013

45

Analysis of small-sample clinical genomics studies using multi-parameter shrinkage: application to high-throughput RNA interference screening

Mark A van de Wiel, Renée X de Menezes, Ellen Siebring-van Olst…

Journal:

BMC Medical Genomics

Year:

2013

Language:

english

File:

PDF, 569 KB

english, 2013

46

Spatial Clustering of Array CGH Features in Combination with Hierarchical Multiple Testing

Kim, Kyung In, Roquain, Etienne, van de Wiel, Mark A

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 2.92 MB

english, 2010

47

A Test for Partial Differential Expression

Wessel N. Van Wieringen, Mark A. Van De Wiel and Aad W. Van Der Vaart

Journal:

Journal of the American Statistical Association

Year:

2008

Language:

english

File:

PDF, 1.45 MB

english, 2008

48

Exact Distributions of Multiple Comparisons Rank Statistics

Mark A. van de Wiel

Journal:

Journal of the American Statistical Association

Year:

2002

Language:

english

File:

PDF, 343 KB

english, 2002

49

ShrinkBayes: a versatile R-package for analysis of count-based sequencing data in complex study designs

van de Wiel, Mark A, Neerincx, Maarten, Buffart, Tineke E, Sie, Daoud, Verheul, Henk MW

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 189 KB

english, 2014

50

Exact Distributions of Multiple Comparisons Rank Statistics

van de Wiel, Mark A

Journal:

Journal of the American Statistical Association

Year:

2002

Language:

english

File:

PDF, 243 KB

english, 2002

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